wyBuild changes files when updating from version A to version B in the following cases:
- Config file is in version A, but removed in version B (the files is deleted)- Config file is in version B, but not in a (the file is added)- The file differs between version A and B (the file is patched).
To tell wyBuild to leave your config files alone, just remove the config files from all versions in wyBuild. It will then ignore them whether they changed or not.